J4_3J6B_003
3D structure
- PDB id
- 3J6B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAAA*UC*GAAU*AG
- Length
- 14 nucleotides
- Bulged bases
- 3J6B|1|A|G|1304, 3J6B|1|A|A|1305, 3J6B|1|A|A|1307, 3J6B|1|A|A|1599
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J6B_003 not in the Motif Atlas
- Homologous match to J4_4WF9_004
- Geometric discrepancy: 0.4527
- The information below is about J4_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
3J6B|1|A|C|1303
3J6B|1|A|G|1304
3J6B|1|A|A|1305
3J6B|1|A|A|1306
3J6B|1|A|A|1307
3J6B|1|A|A|1308
*
3J6B|1|A|U|1325
3J6B|1|A|C|1326
*
3J6B|1|A|G|1597
3J6B|1|A|A|1598
3J6B|1|A|A|1599
3J6B|1|A|U|1600
*
3J6B|1|A|A|1909
3J6B|1|A|G|1910
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain 3
- 54S ribosomal protein L27, mitochondrial
- Chain L
- 54S ribosomal protein L8, mitochondrial
- Chain O
- 54S ribosomal protein L22, mitochondrial
- Chain W
- 54S ribosomal protein L32, mitochondrial
- Chain d
- Mitochondrial homologous recombination protein 1
Coloring options: