J4_3J6B_004
3D structure
- PDB id
- 3J6B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUU*AAAA*UAUA*UGUAUACCGUAAU
- Length
- 25 nucleotides
- Bulged bases
- 3J6B|1|A|U|1342, 3J6B|1|A|A|1352, 3J6B|1|A|U|1412, 3J6B|1|A|A|1548
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6B|1|A|G|1340
3J6B|1|A|G|1341
3J6B|1|A|U|1342
3J6B|1|A|U|1343
*
3J6B|1|A|A|1351
3J6B|1|A|A|1352
3J6B|1|A|A|1353
3J6B|1|A|A|1354
*
3J6B|1|A|U|1410
3J6B|1|A|A|1411
3J6B|1|A|U|1412
3J6B|1|A|A|1413
*
3J6B|1|A|U|1545
3J6B|1|A|G|1546
3J6B|1|A|U|1547
3J6B|1|A|A|1548
3J6B|1|A|U|1549
3J6B|1|A|A|1550
3J6B|1|A|C|1551
3J6B|1|A|C|1552
3J6B|1|A|G|1553
3J6B|1|A|U|1554
3J6B|1|A|A|1555
3J6B|1|A|A|1556
3J6B|1|A|U|1557
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain 3
- 54S ribosomal protein L27, mitochondrial
- Chain P
- 54S ribosomal protein L41, mitochondrial
- Chain Y
- 54S ribosomal protein L34, mitochondrial
- Chain d
- Mitochondrial homologous recombination protein 1
Coloring options: