J4_3J6B_006
3D structure
- PDB id
- 3J6B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUG*CA*UAUAAUGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 3J6B|1|A|U|1871
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J6B_006 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1544
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
3J6B|1|A|C|1741
3J6B|1|A|U|1742
3J6B|1|A|G|1743
*
3J6B|1|A|C|1806
3J6B|1|A|A|1807
*
3J6B|1|A|U|1824
3J6B|1|A|A|1825
3J6B|1|A|U|1826
3J6B|1|A|A|1827
3J6B|1|A|A|1828
3J6B|1|A|U|1829
3J6B|1|A|G|1830
3J6B|1|A|U|1831
3J6B|1|A|A|1832
3J6B|1|A|G|1833
*
3J6B|1|A|U|1867
3J6B|1|A|G|1868
3J6B|1|A|A|1869
3J6B|1|A|A|1870
3J6B|1|A|U|1871
3J6B|1|A|G|1872
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain B
- 54S ribosomal protein RML2, mitochondrial
Coloring options: