J4_3J6B_006

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CA*UAUAAUGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

3J6B|1|A|U|1871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J6B_006 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1544

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

3J6B|1|A|C|1741
3J6B|1|A|U|1742
3J6B|1|A|G|1743
*
3J6B|1|A|C|1806
3J6B|1|A|A|1807
*
3J6B|1|A|U|1824
3J6B|1|A|A|1825
3J6B|1|A|U|1826
3J6B|1|A|A|1827
3J6B|1|A|A|1828
3J6B|1|A|U|1829
3J6B|1|A|G|1830
3J6B|1|A|U|1831
3J6B|1|A|A|1832
3J6B|1|A|G|1833
*
3J6B|1|A|U|1867
3J6B|1|A|G|1868
3J6B|1|A|A|1869
3J6B|1|A|A|1870
3J6B|1|A|U|1871
3J6B|1|A|G|1872

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain B

54S ribosomal protein RML2, mitochondrial