3D structure

PDB id
3J6B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast mitochondrial large ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUG*CA*UAUAAUGUAG*UGAAUG
Length
21 nucleotides
Bulged bases
3J6B|1|A|U|1871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_3J6B_006 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.1544
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

3J6B|1|A|C|1741
3J6B|1|A|U|1742
3J6B|1|A|G|1743
*
3J6B|1|A|C|1806
3J6B|1|A|A|1807
*
3J6B|1|A|U|1824
3J6B|1|A|A|1825
3J6B|1|A|U|1826
3J6B|1|A|A|1827
3J6B|1|A|A|1828
3J6B|1|A|U|1829
3J6B|1|A|G|1830
3J6B|1|A|U|1831
3J6B|1|A|A|1832
3J6B|1|A|G|1833
*
3J6B|1|A|U|1867
3J6B|1|A|G|1868
3J6B|1|A|A|1869
3J6B|1|A|A|1870
3J6B|1|A|U|1871
3J6B|1|A|G|1872

Current chains

Chain A
21S ribosomal RNA

Nearby chains

Chain B
54S ribosomal protein RML2, mitochondrial

Coloring options:


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