J4_3J7R_008

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAGCC*GCAG*CGUGUCCUU*AGUC

Length

23 nucleotides

Bulged bases

3J7R|1|S6|U|47

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J7R|1|S6|G|7
3J7R|1|S6|U|8
3J7R|1|S6|A|9
3J7R|1|S6|G|10
3J7R|1|S6|C|11
3J7R|1|S6|C|12
*
3J7R|1|S6|G|24
3J7R|1|S6|C|25
3J7R|1|S6|A|26
3J7R|1|S6|G|27
*
3J7R|1|S6|C|43
3J7R|1|S6|G|44
3J7R|1|S6|U|45
3J7R|1|S6|G|46
3J7R|1|S6|U|47
3J7R|1|S6|C|48
3J7R|1|S6|C|49
3J7R|1|S6|U|50
3J7R|1|S6|U|51
*
3J7R|1|S6|A|64
3J7R|1|S6|G|65
3J7R|1|S6|U|66
3J7R|1|S6|C|67

Current chains

Chain S6

P/E tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain o

Ribosomal protein eL42

Chain z

Ribosomal protein uL1