J4_3J7Z_002

3D structure

PDB id

3J7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmCL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J7Z_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0701

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

3J7Z|1|A|G|297
3J7Z|1|A|G|298
3J7Z|1|A|A|299
3J7Z|1|A|A|300
3J7Z|1|A|G|301
*
3J7Z|1|A|C|316
3J7Z|1|A|G|317
3J7Z|1|A|C|318
3J7Z|1|A|G|319
*
3J7Z|1|A|C|323
3J7Z|1|A|A|324
3J7Z|1|A|G|325
*
3J7Z|1|A|C|337
3J7Z|1|A|G|338
3J7Z|1|A|U|339
3J7Z|1|A|A|340
3J7Z|1|A|C|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24