J4_3J81_005

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUUGU*AAAUAACGAUACAGG*CUUGUAAUUGGAAUGAGUACAAUGUAAAUACCUUAACGAGGAACAAC*GUAG

Length

71 nucleotides

Bulged bases

3J81|1|2|A|505, 3J81|1|2|U|523, 3J81|1|2|A|540, 3J81|1|2|A|541, 3J81|1|2|A|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|C|31
3J81|1|2|U|32
3J81|1|2|U|33
3J81|1|2|G|34
3J81|1|2|U|35
*
3J81|1|2|A|472
3J81|1|2|A|473
3J81|1|2|A|474
3J81|1|2|U|475
3J81|1|2|A|476
3J81|1|2|A|477
3J81|1|2|C|478
3J81|1|2|G|479
3J81|1|2|A|480
3J81|1|2|U|481
3J81|1|2|A|482
3J81|1|2|C|483
3J81|1|2|A|484
3J81|1|2|G|485
3J81|1|2|G|486
*
3J81|1|2|C|499
3J81|1|2|U|500
3J81|1|2|U|501
3J81|1|2|G|502
3J81|1|2|U|503
3J81|1|2|A|504
3J81|1|2|A|505
3J81|1|2|U|506
3J81|1|2|U|507
3J81|1|2|G|508
3J81|1|2|G|509
3J81|1|2|A|510
3J81|1|2|A|511
3J81|1|2|U|512
3J81|1|2|G|513
3J81|1|2|A|514
3J81|1|2|G|515
3J81|1|2|U|516
3J81|1|2|A|517
3J81|1|2|C|518
3J81|1|2|A|519
3J81|1|2|A|520
3J81|1|2|U|521
3J81|1|2|G|522
3J81|1|2|U|523
3J81|1|2|A|524
3J81|1|2|A|525
3J81|1|2|A|526
3J81|1|2|U|527
3J81|1|2|A|528
3J81|1|2|C|529
3J81|1|2|C|530
3J81|1|2|U|531
3J81|1|2|U|532
3J81|1|2|A|533
3J81|1|2|A|534
3J81|1|2|C|535
3J81|1|2|G|536
3J81|1|2|A|537
3J81|1|2|G|538
3J81|1|2|G|539
3J81|1|2|A|540
3J81|1|2|A|541
3J81|1|2|C|542
3J81|1|2|A|543
3J81|1|2|A|544
3J81|1|2|C|545
*
3J81|1|2|G|591
3J81|1|2|U|592
3J81|1|2|A|593
3J81|1|2|G|594

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain J

uS4

Chain X

uS12

Chain Y

eS24

Chain e

eS30