J4_3J9Y_014
3D structure
- PDB id
- 3J9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 3J9Y|1|v|4SU|8, 3J9Y|1|v|U|47, 3J9Y|1|v|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J9Y_014 not in the Motif Atlas
- Homologous match to J4_9DFC_015
- Geometric discrepancy: 0.149
- The information below is about J4_9DFC_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
3J9Y|1|v|G|7
3J9Y|1|v|4SU|8
3J9Y|1|v|G|9
3J9Y|1|v|G|10
*
3J9Y|1|v|C|25
3J9Y|1|v|G|26
3J9Y|1|v|U|27
*
3J9Y|1|v|A|43
3J9Y|1|v|A|44
3J9Y|1|v|G|45
3J9Y|1|v|A|46
3J9Y|1|v|U|47
3J9Y|1|v|C|48
3J9Y|1|v|G|49
*
3J9Y|1|v|C|65
3J9Y|1|v|C|66
Current chains
- Chain v
- P-site fMet-tRNAfMet
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- 30S ribosomal protein S13
Coloring options: