J4_3JAG_002
3D structure
- PDB id
- 3JAG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- AUAG*CAU*AGGGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 3JAG|1|3|U|8, 3JAG|1|3|U|47, 3JAG|1|3|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3JAG_002 not in the Motif Atlas
- Homologous match to J4_8VU0_001
- Geometric discrepancy: 0.1857
- The information below is about J4_8VU0_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
3JAG|1|3|A|7
3JAG|1|3|U|8
3JAG|1|3|A|9
3JAG|1|3|G|10
*
3JAG|1|3|C|25
3JAG|1|3|A|26
3JAG|1|3|U|27
*
3JAG|1|3|A|43
3JAG|1|3|G|44
3JAG|1|3|G|45
3JAG|1|3|G|46
3JAG|1|3|U|47
3JAG|1|3|C|48
3JAG|1|3|C|49
*
3JAG|1|3|G|65
3JAG|1|3|U|66
Current chains
- Chain 3
- tRNA(Lys)
Nearby chains
- Chain FF
- uS7
- Chain OO
- uS11
- Chain o
- eL42
Coloring options: