J4_3JAP_001

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GUGG*CGC*GAUGUCC*GC

Length

16 nucleotides

Bulged bases

3JAP|1|1|G|9, 3JAP|1|1|U|45

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|1|G|7
3JAP|1|1|U|8
3JAP|1|1|G|9
3JAP|1|1|G|10
*
3JAP|1|1|C|25
3JAP|1|1|G|26
3JAP|1|1|C|27
*
3JAP|1|1|G|43
3JAP|1|1|A|44
3JAP|1|1|U|45
3JAP|1|1|G|46
3JAP|1|1|U|47
3JAP|1|1|C|48
3JAP|1|1|C|49
*
3JAP|1|1|G|65
3JAP|1|1|C|66

Current chains

Chain 1

Met-tRNAi (U31:A39 variant)

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain S

uS13

Chain j

eIF2 alpha

Chain l

eIF2 beta

Chain m

eIF1