J4_3JAQ_001
3D structure
- PDB id
- 3JAQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- GU(1MG)(2MG)*C(M2G)C*GAU(7MG)(H2U)(5MC)(5MC)*GC
- Length
- 16 nucleotides
- Bulged bases
- 3JAQ|1|1|U|8, 3JAQ|1|1|H2U|47, 3JAQ|1|1|5MC|48
- QA status
- Modified nucleotides: 1MG, 2MG, M2G, 7MG, H2U, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3JAQ_001 not in the Motif Atlas
- Homologous match to J4_6UGG_002
- Geometric discrepancy: 0.2315
- The information below is about J4_6UGG_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
3JAQ|1|1|G|7
3JAQ|1|1|U|8
3JAQ|1|1|1MG|9
3JAQ|1|1|2MG|10
*
3JAQ|1|1|C|25
3JAQ|1|1|M2G|26
3JAQ|1|1|C|27
*
3JAQ|1|1|G|43
3JAQ|1|1|A|44
3JAQ|1|1|U|45
3JAQ|1|1|7MG|46
3JAQ|1|1|H2U|47
3JAQ|1|1|5MC|48
3JAQ|1|1|5MC|49
*
3JAQ|1|1|G|65
3JAQ|1|1|C|66
Current chains
- Chain 1
- Met-tRNAi
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain j
- eIF2 alpha
- Chain l
- eIF2 beta
Coloring options: