J4_3JAQ_003

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GUUAAAAAG*CGAAAG*CCAUAAACUAUG*UUC

Length

30 nucleotides

Bulged bases

3JAQ|1|2|A|618, 3JAQ|1|2|A|622, 3JAQ|1|2|A|1025, 3JAQ|1|2|U|1028, 3JAQ|1|2|U|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAQ|1|2|G|615
3JAQ|1|2|U|616
3JAQ|1|2|U|617
3JAQ|1|2|A|618
3JAQ|1|2|A|619
3JAQ|1|2|A|620
3JAQ|1|2|A|621
3JAQ|1|2|A|622
3JAQ|1|2|G|623
*
3JAQ|1|2|C|974
3JAQ|1|2|G|975
3JAQ|1|2|A|976
3JAQ|1|2|A|977
3JAQ|1|2|A|978
3JAQ|1|2|G|979
*
3JAQ|1|2|C|1020
3JAQ|1|2|C|1021
3JAQ|1|2|A|1022
3JAQ|1|2|U|1023
3JAQ|1|2|A|1024
3JAQ|1|2|A|1025
3JAQ|1|2|A|1026
3JAQ|1|2|C|1027
3JAQ|1|2|U|1028
3JAQ|1|2|A|1029
3JAQ|1|2|U|1030
3JAQ|1|2|G|1031
*
3JAQ|1|2|U|1102
3JAQ|1|2|U|1103
3JAQ|1|2|C|1104

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

uS17

Chain N

uS15

Chain O

uS11

Chain W

uS8

Chain X

uS12

Chain a

eS26

Chain h

eL41

Chain p

eIF3c