J4_3JCD_001
3D structure
- PDB id
- 3JCD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 3JCD|1|8|U|8, 3JCD|1|8|U|47, 3JCD|1|8|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3JCD_001 not in the Motif Atlas
- Homologous match to J4_3TUP_001
- Geometric discrepancy: 0.2424
- The information below is about J4_3TUP_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
3JCD|1|8|A|7
3JCD|1|8|U|8
3JCD|1|8|A|9
3JCD|1|8|G|10
*
3JCD|1|8|C|25
3JCD|1|8|A|26
3JCD|1|8|G|27
*
3JCD|1|8|C|43
3JCD|1|8|G|44
3JCD|1|8|U|45
3JCD|1|8|G|46
3JCD|1|8|U|47
3JCD|1|8|C|48
3JCD|1|8|C|49
*
3JCD|1|8|G|65
3JCD|1|8|U|66
Current chains
- Chain 8
- tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- 30S ribosomal protein S13
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