3D structure

PDB id
3JCD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
AUAGC*GCAGG*CCGUGUCCUU*GAGU
Length
24 nucleotides
Bulged bases
3JCD|1|9|U|8, 3JCD|1|9|U|47, 3JCD|1|9|C|48
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JCD|1|9|A|7
3JCD|1|9|U|8
3JCD|1|9|A|9
3JCD|1|9|G|10
3JCD|1|9|C|11
*
3JCD|1|9|G|24
3JCD|1|9|C|25
3JCD|1|9|A|26
3JCD|1|9|G|27
3JCD|1|9|G|28
*
3JCD|1|9|C|42
3JCD|1|9|C|43
3JCD|1|9|G|44
3JCD|1|9|U|45
3JCD|1|9|G|46
3JCD|1|9|U|47
3JCD|1|9|C|48
3JCD|1|9|C|49
3JCD|1|9|U|50
3JCD|1|9|U|51
*
3JCD|1|9|G|63
3JCD|1|9|A|64
3JCD|1|9|G|65
3JCD|1|9|U|66

Current chains

Chain 9
tRNA

Nearby chains

Chain 1
50S ribosomal protein L33
Chain 5
50S ribosomal protein L1
Chain g
30S ribosomal protein S7

Coloring options:

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