J4_3JCD_004

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JCD_004 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1162

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

3JCD|1|A|G|297
3JCD|1|A|G|298
3JCD|1|A|A|299
3JCD|1|A|A|300
3JCD|1|A|G|301
*
3JCD|1|A|C|316
3JCD|1|A|G|317
3JCD|1|A|C|318
3JCD|1|A|G|319
*
3JCD|1|A|C|323
3JCD|1|A|A|324
3JCD|1|A|G|325
*
3JCD|1|A|C|337
3JCD|1|A|G|338
3JCD|1|A|U|339
3JCD|1|A|A|340
3JCD|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24