J4_3JCD_013

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAGUAAUG*UG*CUAG*CCA

Length

18 nucleotides

Bulged bases

3JCD|1|a|U|121

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCD|1|a|U|114
3JCD|1|a|G|115
3JCD|1|a|A|116
3JCD|1|a|G|117
3JCD|1|a|U|118
3JCD|1|a|A|119
3JCD|1|a|A|120
3JCD|1|a|U|121
3JCD|1|a|G|122
*
3JCD|1|a|U|239
3JCD|1|a|G|240
*
3JCD|1|a|C|286
3JCD|1|a|U|287
3JCD|1|a|A|288
3JCD|1|a|G|289
*
3JCD|1|a|C|311
3JCD|1|a|C|312
3JCD|1|a|A|313

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17