J4_3JCD_022

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

3JCD|1|a|C|576, 3JCD|1|a|A|815, 3JCD|1|a|C|817, 3JCD|1|a|A|819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JCD_022 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.0956

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

3JCD|1|a|G|575
3JCD|1|a|C|576
3JCD|1|a|G|577
*
3JCD|1|a|C|764
3JCD|1|a|G|765
3JCD|1|a|A|766
3JCD|1|a|A|767
3JCD|1|a|A|768
3JCD|1|a|G|769
*
3JCD|1|a|C|810
3JCD|1|a|C|811
3JCD|1|a|G|812
3JCD|1|a|U|813
3JCD|1|a|A|814
3JCD|1|a|A|815
3JCD|1|a|A|816
3JCD|1|a|C|817
3JCD|1|a|G|818
3JCD|1|a|A|819
3JCD|1|a|U|820
3JCD|1|a|G|821
*
3JCD|1|a|C|879
3JCD|1|a|C|880

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain h

30S ribosomal protein S8

Chain l

30S ribosomal protein S12

Chain o

30S ribosomal protein S15

Chain q

30S ribosomal protein S17

Chain u

30S ribosomal protein S21