3D structure

PDB id
3JCT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-em structure of eukaryotic pre-60S ribosomal subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
CAAAUAU*AG*UGAU*AG
Length
15 nucleotides
Bulged bases
3JCT|1|1|A|1452, 3JCT|1|1|U|1455, 3JCT|1|1|A|1456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_3JCT_003 not in the Motif Atlas
Homologous match to J4_8P9A_014
Geometric discrepancy: 0.0915
The information below is about J4_8P9A_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_87855.1
Basepair signature
cWW-F-cWW-F-F-F-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

3JCT|1|1|C|1451
3JCT|1|1|A|1452
3JCT|1|1|A|1453
3JCT|1|1|A|1454
3JCT|1|1|U|1455
3JCT|1|1|A|1456
3JCT|1|1|U|1457
*
3JCT|1|1|A|1475
3JCT|1|1|G|1476
*
3JCT|1|1|U|1877
3JCT|1|1|G|1878
3JCT|1|1|A|1879
3JCT|1|1|U|1880
*
3JCT|1|1|A|2352
3JCT|1|1|G|2353

Current chains

Chain 1
RDN25-1 rRNA

Nearby chains

Chain P
60S ribosomal protein L17-A
Chain R
60S ribosomal protein L19-A
Chain b
Nucleolar GTP-binding protein 1
Chain d
60S ribosomal protein L31-A

Coloring options:


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