Loop J4_3JD5

3D structure

PDB id: 3JD5 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 7 Å

Loop

Sequence: GAGGAGC*GCUACAUUC*GAAUCAAGCACGAAAGUUAUU*AAUAACCAAAGGAGGAUU
Length: 55 nucleotides
Bulged bases: 3JD5|1|A|U|719
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3JD5|1|A|G|543
3JD5|1|A|A|544
3JD5|1|A|G|545
3JD5|1|A|G|546
3JD5|1|A|A|547
3JD5|1|A|G|548
3JD5|1|A|C|549
*
3JD5|1|A|G|712
3JD5|1|A|C|713
3JD5|1|A|U|714
3JD5|1|A|A|715
3JD5|1|A|C|716
3JD5|1|A|A|717
3JD5|1|A|U|718
3JD5|1|A|U|719
3JD5|1|A|C|720
*
3JD5|1|A|G|733
3JD5|1|A|A|734
3JD5|1|A|A|735
3JD5|1|A|U|736
3JD5|1|A|C|737
3JD5|1|A|A|738
3JD5|1|A|A|739
3JD5|1|A|G|740
3JD5|1|A|C|741
3JD5|1|A|A|742
3JD5|1|A|C|743
3JD5|1|A|G|744
3JD5|1|A|A|745
3JD5|1|A|A|746
3JD5|1|A|A|747
3JD5|1|A|G|748
3JD5|1|A|U|749
3JD5|1|A|U|750
3JD5|1|A|A|751
3JD5|1|A|U|752
3JD5|1|A|U|753
*
3JD5|1|A|A|762
3JD5|1|A|A|763
3JD5|1|A|U|764
3JD5|1|A|A|765
3JD5|1|A|A|766
3JD5|1|A|C|767
3JD5|1|A|C|768
3JD5|1|A|A|769
3JD5|1|A|A|770
3JD5|1|A|A|771
3JD5|1|A|G|772
3JD5|1|A|G|773
3JD5|1|A|A|774
3JD5|1|A|G|775
3JD5|1|A|G|776
3JD5|1|A|A|777
3JD5|1|A|U|778
3JD5|1|A|U|779

Current chains

Chain A: 28S ribosomal RNA, mitochondial

Nearby chains

Chain G: 28S ribosomal protein S7, mitochondrial
Chain I: 28S ribosomal protein S9, mitochondrial
Chain g: 28S ribosomal protein S29, mitochondrial
Chain i: 28S ribosomal protein S33, mitochondrial

J4_3JD5_001