Loop J4_3JYV

3D structure

PDB id: 3JYV (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.9 Å

Loop

Sequence: CUUGUCU*AUAAAUAAC*GGAAUGAGUACAAUGUAAAUACCUUAACGAGGAACAAU*AUAG
Length: 58 nucleotides
Bulged bases: 3JYV|1|A|A|475, 3JYV|1|A|U|476, 3JYV|1|A|C|543, 3JYV|1|A|A|544
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3JYV|1|A|C|31
3JYV|1|A|U|32
3JYV|1|A|U|33
3JYV|1|A|G|34
3JYV|1|A|U|35
3JYV|1|A|C|36
3JYV|1|A|U|37
*
3JYV|1|A|A|471
3JYV|1|A|U|472
3JYV|1|A|A|473
3JYV|1|A|A|474
3JYV|1|A|A|475
3JYV|1|A|U|476
3JYV|1|A|A|477
3JYV|1|A|A|478
3JYV|1|A|C|479
*
3JYV|1|A|G|509
3JYV|1|A|G|510
3JYV|1|A|A|511
3JYV|1|A|A|512
3JYV|1|A|U|513
3JYV|1|A|G|514
3JYV|1|A|A|515
3JYV|1|A|G|516
3JYV|1|A|U|517
3JYV|1|A|A|518
3JYV|1|A|C|519
3JYV|1|A|A|520
3JYV|1|A|A|521
3JYV|1|A|U|522
3JYV|1|A|G|523
3JYV|1|A|U|524
3JYV|1|A|A|525
3JYV|1|A|A|526
3JYV|1|A|A|527
3JYV|1|A|U|528
3JYV|1|A|A|529
3JYV|1|A|C|530
3JYV|1|A|C|531
3JYV|1|A|U|532
3JYV|1|A|U|533
3JYV|1|A|A|534
3JYV|1|A|A|535
3JYV|1|A|C|536
3JYV|1|A|G|537
3JYV|1|A|A|538
3JYV|1|A|G|539
3JYV|1|A|G|540
3JYV|1|A|A|541
3JYV|1|A|A|542
3JYV|1|A|C|543
3JYV|1|A|A|544
3JYV|1|A|A|545
3JYV|1|A|U|546
*
3JYV|1|A|A|592
3JYV|1|A|U|593
3JYV|1|A|A|594
3JYV|1|A|G|595

Current chains

Chain A: 18S rRNA

Nearby chains

Chain D: 40S ribosomal protein S9(A)
Chain L: 40S ribosomal protein S23(A)

J4_3JYV_002