J4_3JYV_003

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CAUUAAAUC*GCC*GUAC*GG

Length

18 nucleotides

Bulged bases

3JYV|1|A|A|105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JYV|1|A|C|99
3JYV|1|A|A|100
3JYV|1|A|U|101
3JYV|1|A|U|102
3JYV|1|A|A|103
3JYV|1|A|A|104
3JYV|1|A|A|105
3JYV|1|A|U|106
3JYV|1|A|C|107
*
3JYV|1|A|G|307
3JYV|1|A|C|308
3JYV|1|A|C|309
*
3JYV|1|A|G|357
3JYV|1|A|U|358
3JYV|1|A|A|359
3JYV|1|A|C|361
*
3JYV|1|A|G|383
3JYV|1|A|G|384

Current chains

Chain A

18S rRNA

Nearby chains

Chain L

40S ribosomal protein S23(A)

Chain Q

40S ribosomal protein S11