J4_3JYV_004
3D structure
- PDB id
- 3JYV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- AAGCU*AACGAAAG*CCAUAAACUAUG*UU
- Length
- 27 nucleotides
- Bulged bases
- 3JYV|1|A|A|623, 3JYV|1|A|A|1025, 3JYV|1|A|C|1027, 3JYV|1|A|U|1028, 3JYV|1|A|A|1029, 3JYV|1|A|U|1030
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JYV|1|A|A|622
3JYV|1|A|A|623
3JYV|1|A|G|624
3JYV|1|A|C|625
3JYV|1|A|U|626
*
3JYV|1|A|A|972
3JYV|1|A|A|973
3JYV|1|A|C|974
3JYV|1|A|G|975
3JYV|1|A|A|976
3JYV|1|A|A|977
3JYV|1|A|A|978
3JYV|1|A|G|979
*
3JYV|1|A|C|1020
3JYV|1|A|C|1021
3JYV|1|A|A|1022
3JYV|1|A|U|1023
3JYV|1|A|A|1024
3JYV|1|A|A|1025
3JYV|1|A|A|1026
3JYV|1|A|C|1027
3JYV|1|A|U|1028
3JYV|1|A|A|1029
3JYV|1|A|U|1030
3JYV|1|A|G|1031
*
3JYV|1|A|U|1100
3JYV|1|A|U|1101
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain H
- 40S ribosomal protein S22(A)
- Chain O
- 40S ribosomal protein S13
- Chain Q
- 40S ribosomal protein S11
Coloring options: