J4_3JYV_005
3D structure
- PDB id
- 3JYV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UGACUUUGG*CUUUC*GACCAUCGUAAUGAUUAG*CAUUA
- Length
- 37 nucleotides
- Bulged bases
- 3JYV|1|A|U|694, 3JYV|1|A|U|857, 3JYV|1|A|G|858, 3JYV|1|A|A|859, 3JYV|1|A|U|860, 3JYV|1|A|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JYV|1|A|U|633
3JYV|1|A|G|634
3JYV|1|A|A|635
3JYV|1|A|C|637
3JYV|1|A|U|638
3JYV|1|A|U|639
3JYV|1|A|U|640
3JYV|1|A|G|641
3JYV|1|A|G|642
*
3JYV|1|A|C|692
3JYV|1|A|U|693
3JYV|1|A|U|694
3JYV|1|A|U|695
3JYV|1|A|C|696
*
3JYV|1|A|G|846
3JYV|1|A|A|847
3JYV|1|A|C|848
3JYV|1|A|C|849
3JYV|1|A|A|850
3JYV|1|A|U|851
3JYV|1|A|C|852
3JYV|1|A|G|853
3JYV|1|A|U|854
3JYV|1|A|A|855
3JYV|1|A|A|856
3JYV|1|A|U|857
3JYV|1|A|G|858
3JYV|1|A|A|859
3JYV|1|A|U|860
3JYV|1|A|U|864
3JYV|1|A|A|865
3JYV|1|A|G|866
*
3JYV|1|A|C|961
3JYV|1|A|A|962
3JYV|1|A|U|963
3JYV|1|A|U|964
3JYV|1|A|A|965
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain H
- 40S ribosomal protein S22(A)
- Chain O
- 40S ribosomal protein S13
- Chain Q
- 40S ribosomal protein S11
Coloring options: