J4_3JYV_006

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUAACCUUGA*UUUA*UGUUCAAAG*CUCGAAUAUAUUAG

Length

37 nucleotides

Bulged bases

3JYV|1|A|C|708, 3JYV|1|A|A|793, 3JYV|1|A|U|794, 3JYV|1|A|U|795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JYV|1|A|C|704
3JYV|1|A|U|705
3JYV|1|A|A|706
3JYV|1|A|A|707
3JYV|1|A|C|708
3JYV|1|A|C|709
3JYV|1|A|U|710
3JYV|1|A|U|711
3JYV|1|A|G|712
3JYV|1|A|A|713
*
3JYV|1|A|U|742
3JYV|1|A|U|743
3JYV|1|A|U|744
3JYV|1|A|A|746
*
3JYV|1|A|U|764
3JYV|1|A|G|765
3JYV|1|A|U|766
3JYV|1|A|U|767
3JYV|1|A|C|768
3JYV|1|A|A|769
3JYV|1|A|A|770
3JYV|1|A|A|771
3JYV|1|A|G|772
*
3JYV|1|A|C|784
3JYV|1|A|U|785
3JYV|1|A|C|786
3JYV|1|A|G|787
3JYV|1|A|A|788
3JYV|1|A|A|789
3JYV|1|A|U|790
3JYV|1|A|A|791
3JYV|1|A|U|792
3JYV|1|A|A|793
3JYV|1|A|U|794
3JYV|1|A|U|795
3JYV|1|A|A|796
3JYV|1|A|G|797

Current chains

Chain A

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S22(A)

Chain Q

40S ribosomal protein S11