J4_3PIP_002

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGACC*GGACAGCAG*CUGCACCGAU*AUUGCC

Length

30 nucleotides

Bulged bases

3PIP|1|X|A|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|G|1360
3PIP|1|X|G|1361
3PIP|1|X|A|1362
3PIP|1|X|C|1363
3PIP|1|X|C|1364
*
3PIP|1|X|G|1393
3PIP|1|X|G|1394
3PIP|1|X|A|1395
3PIP|1|X|C|1396
3PIP|1|X|A|1397
3PIP|1|X|G|1398
3PIP|1|X|C|1399
3PIP|1|X|A|1400
3PIP|1|X|G|1401
*
3PIP|1|X|C|1412
3PIP|1|X|U|1413
3PIP|1|X|G|1414
3PIP|1|X|C|1415
3PIP|1|X|A|1416
3PIP|1|X|C|1417
3PIP|1|X|C|1418
3PIP|1|X|G|1419
3PIP|1|X|A|1420
3PIP|1|X|U|1421
*
3PIP|1|X|A|1610
3PIP|1|X|U|1611
3PIP|1|X|U|1612
3PIP|1|X|G|1613
3PIP|1|X|C|1614
3PIP|1|X|C|1615

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain Q

50S ribosomal protein L23