J4_3PIP_003

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AAUGC*GUUG*CGGGAGCU*AGCGAAGUU

Length

26 nucleotides

Bulged bases

3PIP|1|X|U|1459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|A|1457
3PIP|1|X|A|1458
3PIP|1|X|U|1459
3PIP|1|X|G|1460
3PIP|1|X|C|1461
*
3PIP|1|X|G|1480
3PIP|1|X|U|1481
3PIP|1|X|U|1482
3PIP|1|X|G|1483
*
3PIP|1|X|C|1540
3PIP|1|X|G|1541
3PIP|1|X|G|1542
3PIP|1|X|G|1543
3PIP|1|X|A|1544
3PIP|1|X|G|1545
3PIP|1|X|C|1546
3PIP|1|X|U|1547
*
3PIP|1|X|A|1556
3PIP|1|X|G|1557
3PIP|1|X|C|1558
3PIP|1|X|G|1559
3PIP|1|X|A|1560
3PIP|1|X|A|1561
3PIP|1|X|G|1562
3PIP|1|X|U|1563
3PIP|1|X|U|1564

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains