J4_3PIP_004

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GCAAUCUCA*UC*GCGCAGUGAAUAGGCC*GGCGC

Length

32 nucleotides

Bulged bases

3PIP|1|X|G|1749, 3PIP|1|X|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|G|1691
3PIP|1|X|C|1692
3PIP|1|X|A|1693
3PIP|1|X|A|1694
3PIP|1|X|U|1695
3PIP|1|X|C|1696
3PIP|1|X|U|1697
3PIP|1|X|C|1698
3PIP|1|X|A|1699
*
3PIP|1|X|U|1723
3PIP|1|X|C|1724
*
3PIP|1|X|G|1742
3PIP|1|X|C|1743
3PIP|1|X|G|1744
3PIP|1|X|C|1745
3PIP|1|X|A|1746
3PIP|1|X|G|1747
3PIP|1|X|U|1748
3PIP|1|X|G|1749
3PIP|1|X|A|1750
3PIP|1|X|A|1751
3PIP|1|X|U|1752
3PIP|1|X|A|1753
3PIP|1|X|G|1754
3PIP|1|X|G|1755
3PIP|1|X|C|1756
3PIP|1|X|C|1757
*
3PIP|1|X|G|1969
3PIP|1|X|G|1970
3PIP|1|X|C|1971
3PIP|1|X|G|1972
3PIP|1|X|C|1973

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14

Chain M

50S ribosomal protein L19