J4_3PIP_006

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CAAAGG*CUUGACU*AGGG*CGG

Length

20 nucleotides

Bulged bases

3PIP|1|X|A|2267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|C|2264
3PIP|1|X|A|2265
3PIP|1|X|A|2266
3PIP|1|X|A|2267
3PIP|1|X|G|2268
3PIP|1|X|G|2269
*
3PIP|1|X|C|2321
3PIP|1|X|U|2322
3PIP|1|X|U|2323
3PIP|1|X|G|2324
3PIP|1|X|A|2325
3PIP|1|X|C|2326
3PIP|1|X|U|2327
*
3PIP|1|X|A|2348
3PIP|1|X|G|2349
3PIP|1|X|G|2350
3PIP|1|X|G|2351
*
3PIP|1|X|C|2360
3PIP|1|X|G|2361
3PIP|1|X|G|2362

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain T

50S ribosomal protein L27