J4_3PIP_007

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGAGU*AAC*GGAACG*CAGCC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|G|2621
3PIP|1|X|G|2622
3PIP|1|X|A|2623
3PIP|1|X|G|2624
3PIP|1|X|U|2625
*
3PIP|1|X|A|2653
3PIP|1|X|A|2654
3PIP|1|X|C|2655
*
3PIP|1|X|G|2711
3PIP|1|X|G|2712
3PIP|1|X|A|2713
3PIP|1|X|A|2714
3PIP|1|X|C|2715
3PIP|1|X|G|2716
*
3PIP|1|X|C|2748
3PIP|1|X|A|2749
3PIP|1|X|G|2750
3PIP|1|X|C|2751
3PIP|1|X|C|2752

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain H

50S ribosomal protein L14