J4_3R8N_004
3D structure
- PDB id
- 3R8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of the bacterial ribosome in classical and hybrid states of tRNA binding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 3R8N|1|V|U|8, 3R8N|1|V|U|45, 3R8N|1|V|U|47, 3R8N|1|V|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3R8N_004 not in the Motif Atlas
- Homologous match to J4_1GAX_004
- Geometric discrepancy: 0.474
- The information below is about J4_1GAX_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
3R8N|1|V|A|7
3R8N|1|V|U|8
3R8N|1|V|A|9
3R8N|1|V|G|10
*
3R8N|1|V|C|25
3R8N|1|V|A|26
3R8N|1|V|G|27
*
3R8N|1|V|C|43
3R8N|1|V|G|44
3R8N|1|V|U|45
3R8N|1|V|G|46
3R8N|1|V|U|47
3R8N|1|V|C|48
3R8N|1|V|C|49
*
3R8N|1|V|G|65
3R8N|1|V|U|66
Current chains
- Chain V
- phenylalanine specific transfer RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- 30S ribosomal protein S13
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