J4_3SUY_001

3D structure

PDB id

3SUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of THF riboswitch, unbound status

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GUAG*CGC*GUAG*CGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3SUY_001 not in the Motif Atlas

Homologous match to J4_3SUX_001

Geometric discrepancy: 0.1021

The information below is about J4_3SUX_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_99897.1

Basepair signature

cWW-F-cWW-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

1

Unit IDs

3SUY|1|X|G|8||||17_555
3SUY|1|X|U|9||||17_555
3SUY|1|X|A|10||||17_555
3SUY|1|X|G|11||||17_555
*
3SUY|1|X|C|87||||17_555
3SUY|1|X|G|88||||17_555
3SUY|1|X|C|89||||17_555
*
3SUY|1|X|G|8
3SUY|1|X|U|9
3SUY|1|X|A|10
3SUY|1|X|G|11
*
3SUY|1|X|C|87
3SUY|1|X|G|88
3SUY|1|X|C|89

Current chains

Chain X

riboswitch

Nearby chains