J4_3V11_001

3D structure

PDB id

3V11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ternary initiation complex AIF2:GDPNP:methionylated initiator TRNA

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

G(4SU)GG*CGU*AAGAUCG*CC

Length

16 nucleotides

Bulged bases

3V11|1|D|4SU|8, 3V11|1|D|U|47, 3V11|1|D|C|48

QA status

Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3V11_001 not in the Motif Atlas

Homologous match to J4_6CFJ_015

Geometric discrepancy: 0.2146

The information below is about J4_6CFJ_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

3V11|1|D|G|7
3V11|1|D|4SU|8
3V11|1|D|G|9
3V11|1|D|G|10
*
3V11|1|D|C|25
3V11|1|D|G|26
3V11|1|D|U|27
*
3V11|1|D|A|43
3V11|1|D|A|44
3V11|1|D|G|45
3V11|1|D|A|46
3V11|1|D|U|47
3V11|1|D|C|48
3V11|1|D|G|49
*
3V11|1|D|C|65
3V11|1|D|C|66

Current chains

Chain D

Initiator tRNA

Nearby chains

Chain B

Translation initiation factor 2 subunit alpha