J4_3WQY_001

3D structure

PDB id

3WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Archaeoglobus fulgidus alanyl-tRNA synthetase in complex with wild-type tRNA(Ala) having G3.U70

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUAG*CGC*GAGGCCG*CC

Length

16 nucleotides

Bulged bases

3WQY|1|C|U|1608, 3WQY|1|C|C|1647, 3WQY|1|C|C|1648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.27

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

53

Unit IDs

3WQY|1|C|G|1607
3WQY|1|C|U|1608
3WQY|1|C|A|1609
3WQY|1|C|G|1610
*
3WQY|1|C|C|1625
3WQY|1|C|G|1626
3WQY|1|C|C|1627
*
3WQY|1|C|G|1643
3WQY|1|C|A|1644
3WQY|1|C|G|1645
3WQY|1|C|G|1646
3WQY|1|C|C|1647
3WQY|1|C|C|1648
3WQY|1|C|G|1649
*
3WQY|1|C|C|1665
3WQY|1|C|C|1666

Current chains

Chain C

RNA (75-MER)

Nearby chains

Chain A

Alanine--tRNA ligase

Chain B

Alanine--tRNA ligase