J4_3ZD4_001

3D structure

PDB id

3ZD4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Full-Length Hammerhead Ribozyme with G12A substitution at the general base position

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

GC*GAG*CAAAA*U(OMC)C

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3ZD4|1|A|G|14
3ZD4|1|A|C|15
*
3ZD4|1|A|G|20
3ZD4|1|A|A|21
3ZD4|1|A|G|22
*
3ZD4|1|A|C|35
3ZD4|1|A|A|36
3ZD4|1|A|A|37
3ZD4|1|A|A|38
3ZD4|1|A|A|39
*
3ZD4|1|B|U|5
3ZD4|1|B|OMC|6
3ZD4|1|B|C|7

Current chains

Chain A

HAMMERHEAD RIBOZYME, ENZYME STRAND

Chain B

HAMMERHEAD RIBOZYME, SUBSTRATE STRAND

Nearby chains