J4_4C4Q_002

3D structure

PDB id

4C4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of the CSFV IRES in complex with the small ribosomal 40S subunit and DHX29

Experimental method

ELECTRON MICROSCOPY

Resolution

8.5 Å

Loop

Sequence

CUG*UUAA*UGAAAU*AUG

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4C4Q|1|N|C|151
4C4Q|1|N|U|152
4C4Q|1|N|G|153
*
4C4Q|1|N|U|255
4C4Q|1|N|U|256
4C4Q|1|N|A|257
4C4Q|1|N|A|258
*
4C4Q|1|N|U|280
4C4Q|1|N|G|281
4C4Q|1|N|A|282
4C4Q|1|N|A|283
4C4Q|1|N|A|284
4C4Q|1|N|U|285
*
4C4Q|1|N|A|297
4C4Q|1|N|U|298
4C4Q|1|N|G|299

Current chains

Chain N

INTERNAL RIBOSOMAL ENTRY SITE

Nearby chains