J4_4C4Q_003

3D structure

PDB id

4C4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of the CSFV IRES in complex with the small ribosomal 40S subunit and DHX29

Experimental method

ELECTRON MICROSCOPY

Resolution

8.5 Å

Loop

Sequence

UAAG*CAGU*AG*CAA

Length

13 nucleotides

Bulged bases

4C4Q|1|N|A|163

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4C4Q|1|N|U|161
4C4Q|1|N|A|162
4C4Q|1|N|A|163
4C4Q|1|N|G|164
*
4C4Q|1|N|C|179
4C4Q|1|N|A|180
4C4Q|1|N|G|181
4C4Q|1|N|U|182
*
4C4Q|1|N|A|234
4C4Q|1|N|G|235
*
4C4Q|1|N|C|244
4C4Q|1|N|A|245
4C4Q|1|N|A|246

Current chains

Chain N

INTERNAL RIBOSOMAL ENTRY SITE

Nearby chains