J4_4D61_003
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UGGA*UACACUG*CGUGAUGGGGAUCG*CAUGAACGAGGAA
- Length
- 38 nucleotides
- Bulged bases
- 4D61|1|1|U|1535, 4D61|1|1|G|1600, 4D61|1|1|U|1602, 4D61|1|1|G|1603
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D61|1|1|U|1225
4D61|1|1|G|1226
4D61|1|1|G|1227
4D61|1|1|A|1228
*
4D61|1|1|U|1530
4D61|1|1|A|1531
4D61|1|1|C|1532
4D61|1|1|A|1533
4D61|1|1|C|1534
4D61|1|1|U|1535
4D61|1|1|G|1536
*
4D61|1|1|C|1597
4D61|1|1|G|1598
4D61|1|1|U|1599
4D61|1|1|G|1600
4D61|1|1|A|1601
4D61|1|1|U|1602
4D61|1|1|G|1603
4D61|1|1|G|1604
4D61|1|1|G|1605
4D61|1|1|G|1606
4D61|1|1|A|1607
4D61|1|1|U|1608
4D61|1|1|C|1609
4D61|1|1|G|1610
*
4D61|1|1|C|1629
4D61|1|1|A|1630
4D61|1|1|U|1631
4D61|1|1|G|1632
4D61|1|1|A|1633
4D61|1|1|A|1634
4D61|1|1|C|1635
4D61|1|1|G|1636
4D61|1|1|A|1637
4D61|1|1|G|1638
4D61|1|1|G|1639
4D61|1|1|A|1640
4D61|1|1|A|1641
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain F
- 40S RIBOSOMAL PROTEIN S5
- Chain Q
- 40S RIBOSOMAL PROTEIN S16
- Chain S
- 40S RIBOSOMAL PROTEIN S18
- Chain T
- 40S RIBOSOMAL PROTEIN S19
- Chain Z
- 40S RIBOSOMAL PROTEIN S25
- Chain j
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
Coloring options: