J4_4FEP_001

3D structure

PDB id

4FEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A24U/U25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine

Experimental method

X-RAY DIFFRACTION

Resolution

1.65 Å

Loop

Sequence

AUAUAC*GAG*CC*GAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4FEP_001 not in the Motif Atlas

Homologous match to J4_4FEN_001

Geometric discrepancy: 0.0402

The information below is about J4_4FEN_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24220.1

Basepair signature

cWW-F-F-tWS-F-F-cWW-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4FEP|1|B|A|21
4FEP|1|B|U|22
4FEP|1|B|A|23
4FEP|1|B|U|24
4FEP|1|B|A|25
4FEP|1|B|C|26
*
4FEP|1|B|G|44
4FEP|1|B|A|45
4FEP|1|B|G|46
*
4FEP|1|B|C|53
4FEP|1|B|C|54
*
4FEP|1|B|G|72
4FEP|1|B|A|73
4FEP|1|B|U|74
4FEP|1|B|U|75

Current chains

Chain B

A24U/U25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain

Nearby chains