J4_4GMA_001

3D structure

PDB id

4GMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the adenosylcobalamin riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GGGAAGAC*GCGCA*UAC*GGAGACC

Length

23 nucleotides

Bulged bases

4GMA|1|Z|A|54

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4GMA|1|Z|G|48
4GMA|1|Z|G|49
4GMA|1|Z|G|50
4GMA|1|Z|A|51
4GMA|1|Z|A|52
4GMA|1|Z|G|53
4GMA|1|Z|A|54
4GMA|1|Z|C|55
*
4GMA|1|Z|G|69
4GMA|1|Z|C|70
4GMA|1|Z|G|71
4GMA|1|Z|C|72
4GMA|1|Z|A|73
*
4GMA|1|Z|U|82
4GMA|1|Z|A|83
4GMA|1|Z|C|84
*
4GMA|1|Z|G|160
4GMA|1|Z|G|161
4GMA|1|Z|A|162
4GMA|1|Z|G|163
4GMA|1|Z|A|164
4GMA|1|Z|C|165
4GMA|1|Z|C|166

Current chains

Chain Z

Adenosylcobalamin riboswitch

Nearby chains