J4_4IO9_006

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUG*UU*GGGAG*CGAAGU

Length

16 nucleotides

Bulged bases

4IO9|1|X|U|1459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4IO9_006 not in the Motif Atlas

Homologous match to J4_7A0S_007

Geometric discrepancy: 0.076

The information below is about J4_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_91813.1

Basepair signature

cWW-cWW-F-tSH-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

4IO9|1|X|A|1458
4IO9|1|X|U|1459
4IO9|1|X|G|1460
*
4IO9|1|X|U|1481
4IO9|1|X|U|1482
*
4IO9|1|X|G|1541
4IO9|1|X|G|1542
4IO9|1|X|G|1543
4IO9|1|X|A|1544
4IO9|1|X|G|1545
*
4IO9|1|X|C|1558
4IO9|1|X|G|1559
4IO9|1|X|A|1560
4IO9|1|X|A|1561
4IO9|1|X|G|1562
4IO9|1|X|U|1563

Current chains

Chain X

23S ribosomal RNA

Nearby chains