J4_4KZZ_001
3D structure
- PDB id
- 4KZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 7.03 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 4KZZ|1|i|G|397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4KZZ_001 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.2495
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4KZZ|1|i|C|98
4KZZ|1|i|A|99
4KZZ|1|i|U|100
4KZZ|1|i|U|101
4KZZ|1|i|A|102
4KZZ|1|i|A|103
4KZZ|1|i|A|104
4KZZ|1|i|U|105
4KZZ|1|i|C|106
*
4KZZ|1|i|G|345
4KZZ|1|i|C|346
4KZZ|1|i|C|347
*
4KZZ|1|i|G|395
4KZZ|1|i|U|396
4KZZ|1|i|G|397
4KZZ|1|i|A|398
4KZZ|1|i|C|399
*
4KZZ|1|i|G|421
4KZZ|1|i|G|422
Current chains
- Chain i
- 18S Ribosomal RNA
Nearby chains
- Chain E
- 40S Ribosomal Protein S4X
- Chain I
- 40S Ribosomal Protein S8
- Chain L
- 40S Ribosomal Protein S11
- Chain X
- 40S Ribosomal Protein S23
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