J4_4L47_008

3D structure

PDB id

4L47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4L47|1|RA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4L47_008 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0807

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4L47|1|RA|G|1310
4L47|1|RA|G|1311
4L47|1|RA|U|1312
4L47|1|RA|U|1313
4L47|1|RA|C|1314
*
4L47|1|RA|G|1338
4L47|1|RA|G|1339
4L47|1|RA|U|1340
4L47|1|RA|U|1341
4L47|1|RA|A|1342
4L47|1|RA|G|1343
*
4L47|1|RA|C|1404
4L47|1|RA|U|1405
*
4L47|1|RA|A|1597
4L47|1|RA|C|1598
4L47|1|RA|C|1599
4L47|1|RA|C|1600
4L47|1|RA|G|1601
4L47|1|RA|U|1602
4L47|1|RA|A|1603
4L47|1|RA|C|1604

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23