J4_4L47_011

3D structure

PDB id

4L47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4L47_011 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0524

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4L47|1|RA|G|1772
4L47|1|RA|A|1773
4L47|1|RA|C|1774
4L47|1|RA|U|1775
4L47|1|RA|G|1776
*
4L47|1|RA|C|1788
4L47|1|RA|A|1789
4L47|1|RA|C|1790
4L47|1|RA|A|1791
4L47|1|RA|G|1792
*
4L47|1|RA|C|1827
4L47|1|RA|G|1828
4L47|1|RA|A|1829
4L47|1|RA|C|1830
*
4L47|1|RA|G|1975
4L47|1|RA|U|1976
4L47|1|RA|A|1977
4L47|1|RA|A|1978
4L47|1|RA|C|1979

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2