3D structure

PDB id
4L47 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.22 Å

Loop

Sequence
GACUG*CACAG*CGAC*GUAAC
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4L47_011 not in the Motif Atlas
Homologous match to J4_9DFE_007
Geometric discrepancy: 0.0524
The information below is about J4_9DFE_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4L47|1|RA|G|1772
4L47|1|RA|A|1773
4L47|1|RA|C|1774
4L47|1|RA|U|1775
4L47|1|RA|G|1776
*
4L47|1|RA|C|1788
4L47|1|RA|A|1789
4L47|1|RA|C|1790
4L47|1|RA|A|1791
4L47|1|RA|G|1792
*
4L47|1|RA|C|1827
4L47|1|RA|G|1828
4L47|1|RA|A|1829
4L47|1|RA|C|1830
*
4L47|1|RA|G|1975
4L47|1|RA|U|1976
4L47|1|RA|A|1977
4L47|1|RA|A|1978
4L47|1|RA|C|1979

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA
Chain RD
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3728 s