J4_4L71_011

3D structure

PDB id

4L71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4L71_011 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0606

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4L71|1|RA|G|1772
4L71|1|RA|A|1773
4L71|1|RA|C|1774
4L71|1|RA|U|1775
4L71|1|RA|G|1776
*
4L71|1|RA|C|1788
4L71|1|RA|A|1789
4L71|1|RA|C|1790
4L71|1|RA|A|1791
4L71|1|RA|G|1792
*
4L71|1|RA|C|1827
4L71|1|RA|G|1828
4L71|1|RA|A|1829
4L71|1|RA|C|1830
*
4L71|1|RA|G|1975
4L71|1|RA|U|1976
4L71|1|RA|A|1977
4L71|1|RA|A|1978
4L71|1|RA|C|1979

Current chains

Chain RA

23S Ribosomal RNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2