J4_4LFB_001

3D structure

PDB id

4LFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4LFB|1|A|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4LFB|1|A|G|115
4LFB|1|A|A|116
4LFB|1|A|G|117
4LFB|1|A|U|118
4LFB|1|A|A|119
4LFB|1|A|A|120
4LFB|1|A|C|121
4LFB|1|A|G|122
*
4LFB|1|A|U|239
4LFB|1|A|C|240
*
4LFB|1|A|G|286
4LFB|1|A|U|287
4LFB|1|A|A|288
4LFB|1|A|G|289
*
4LFB|1|A|C|311
4LFB|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12

Chain P

ribosomal protein S16

Chain Q

ribosomal protein S17