J4_4LFB_003

3D structure

PDB id

4LFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

GGG*CGAAAG*CCCUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

4LFB|1|A|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.5

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4LFB|1|A|G|575
4LFB|1|A|G|576
4LFB|1|A|G|577
*
4LFB|1|A|C|764
4LFB|1|A|G|765
4LFB|1|A|A|766
4LFB|1|A|A|767
4LFB|1|A|A|768
4LFB|1|A|G|769
*
4LFB|1|A|C|810
4LFB|1|A|C|811
4LFB|1|A|C|812
4LFB|1|A|U|813
4LFB|1|A|A|814
4LFB|1|A|A|815
4LFB|1|A|A|816
4LFB|1|A|C|817
4LFB|1|A|G|818
4LFB|1|A|A|819
4LFB|1|A|U|820
4LFB|1|A|G|821
*
4LFB|1|A|C|879
4LFB|1|A|C|880

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

ribosomal protein S8

Chain L

ribosomal protein S12

Chain O

ribosomal protein S15

Chain Q

ribosomal protein S17