3D structure

PDB id
4LNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.94 Å

Loop

Sequence
GACUG*CACAG*CGAC*GUAAC
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4LNT_026 not in the Motif Atlas
Homologous match to J4_9DFE_007
Geometric discrepancy: 0.0543
The information below is about J4_9DFE_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4LNT|1|YA|G|1772
4LNT|1|YA|A|1773
4LNT|1|YA|C|1774
4LNT|1|YA|U|1775
4LNT|1|YA|G|1776
*
4LNT|1|YA|C|1788
4LNT|1|YA|A|1789
4LNT|1|YA|C|1790
4LNT|1|YA|A|1791
4LNT|1|YA|G|1792
*
4LNT|1|YA|C|1827
4LNT|1|YA|G|1828
4LNT|1|YA|A|1829
4LNT|1|YA|C|1830
*
4LNT|1|YA|G|1975
4LNT|1|YA|U|1976
4LNT|1|YA|A|1977
4LNT|1|YA|A|1978
4LNT|1|YA|C|1979

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YD
50S ribosomal protein L2

Coloring options:


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