J4_4LT8_011

3D structure

PDB id

4LT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4LT8_011 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0516

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4LT8|1|RA|G|1772
4LT8|1|RA|A|1773
4LT8|1|RA|C|1774
4LT8|1|RA|U|1775
4LT8|1|RA|G|1776
*
4LT8|1|RA|C|1788
4LT8|1|RA|A|1789
4LT8|1|RA|C|1790
4LT8|1|RA|A|1791
4LT8|1|RA|G|1792
*
4LT8|1|RA|C|1827
4LT8|1|RA|G|1828
4LT8|1|RA|A|1829
4LT8|1|RA|C|1830
*
4LT8|1|RA|G|1975
4LT8|1|RA|U|1976
4LT8|1|RA|A|1977
4LT8|1|RA|A|1978
4LT8|1|RA|C|1979

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2