J4_4P6F_022
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAAG*CGCC*GAG*CGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4P6F_022 not in the Motif Atlas
- Homologous match to J4_9DFE_002
- Geometric discrepancy: 0.0704
- The information below is about J4_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
4P6F|1|YA|C|297
4P6F|1|YA|G|298
4P6F|1|YA|A|299
4P6F|1|YA|A|300
4P6F|1|YA|G|301
*
4P6F|1|YA|C|316
4P6F|1|YA|G|317
4P6F|1|YA|C|318
4P6F|1|YA|C|319
*
4P6F|1|YA|G|323
4P6F|1|YA|A|324
4P6F|1|YA|G|325
*
4P6F|1|YA|C|337
4P6F|1|YA|G|338
4P6F|1|YA|U|339
4P6F|1|YA|A|340
4P6F|1|YA|G|341
Current chains
- Chain YA
- 23S ribosomal RNA
Nearby chains
- Chain YF
- 50S ribosomal protein L4
- Chain YY
- 50S ribosomal protein L24
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