J4_4P6F_028
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- UUG*CG*CCUAAGGUAG*CGAAAA
- Length
- 21 nucleotides
- Bulged bases
- 4P6F|1|YA|A|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4P6F_028 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1592
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
4P6F|1|YA|U|1833
4P6F|1|YA|U|1834
4P6F|1|YA|G|1835
*
4P6F|1|YA|C|1905
4P6F|1|YA|G|1906
*
4P6F|1|YA|C|1924
4P6F|1|YA|C|1925
4P6F|1|YA|U|1926
4P6F|1|YA|A|1927
4P6F|1|YA|A|1928
4P6F|1|YA|G|1929
4P6F|1|YA|G|1930
4P6F|1|YA|U|1931
4P6F|1|YA|A|1932
4P6F|1|YA|G|1933
*
4P6F|1|YA|C|1967
4P6F|1|YA|G|1968
4P6F|1|YA|A|1969
4P6F|1|YA|A|1970
4P6F|1|YA|A|1971
4P6F|1|YA|A|1972
Current chains
- Chain YA
- 23S ribosomal RNA
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XV
- Transfer RNA; tRNA
- Chain YD
- 50S ribosomal protein L2
Coloring options: