J4_4RDX_003

3D structure

PDB id

4RDX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of histidinyl-tRNA synthetase in complex with tRNA(His)

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GUAG*CAC*GGGGUCG*UC

Length

16 nucleotides

Bulged bases

4RDX|1|C|U|8, 4RDX|1|C|U|47, 4RDX|1|C|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

4RDX|1|C|G|7
4RDX|1|C|U|8
4RDX|1|C|A|9
4RDX|1|C|G|10
*
4RDX|1|C|C|25
4RDX|1|C|A|26
4RDX|1|C|C|27
*
4RDX|1|C|G|43
4RDX|1|C|G|44
4RDX|1|C|G|45
4RDX|1|C|G|46
4RDX|1|C|U|47
4RDX|1|C|C|48
4RDX|1|C|G|49
*
4RDX|1|C|U|65
4RDX|1|C|C|66

Current chains

Chain C

tRNA(his)

Nearby chains

Chain A

Histidine--tRNA ligase